fix: do template substition after parsing prompt YAML

src/prompt.ts

@@ -101,11 +101,8 @@ export function loadPromptFile(filePath: string, templateVariables: TemplateVari
 
   const fileContent = fs.readFileSync(filePath, 'utf-8')
 
-  // Apply template variable substitution
-  const processedContent = replaceTemplateVariables(fileContent, templateVariables)
-
   try {
-    const config = yaml.load(processedContent) as PromptConfig
+    const config = yaml.load(fileContent) as PromptConfig
 
     if (!config.messages || !Array.isArray(config.messages)) {
       throw new Error('Prompt file must contain a "messages" array')
@@ -121,6 +118,14 @@ export function loadPromptFile(filePath: string, templateVariables: TemplateVari
       }
     }
 
+    // Prepare messages by replacing template variables with actual content
+    config.messages = config.messages.map(msg => {
+      return {
+        ...msg,
+        content: replaceTemplateVariables(msg.content, templateVariables),
+      }
+    })
+
     return config
   } catch (error) {
     throw new Error(`Failed to parse prompt file: ${error instanceof Error ? error.message : 'Unknown error'}`)